Links

Our work

• ApPortal: web portal for safety pharmacology, simulations of drug-induced changes to cardiac action potentials.
• Web Lab: to test and compare cardiac models under a wide range of experimental protocols.
• Chaste: Chaste, a C++ library for computational physiology. See the homepage for an introduction, github for live development code. See downloads for archived versions to go with papers, some also have Paper Tutorials for walkthroughs of code. See the wiki for how to get started with Chaste development.
• PINTS: Probabilistic inference for noisy time series - software to perform optimisation and Bayesian inference with time series data.
• Group Github: a github site where code associated with most of our new papers is going.
• Figshare: files I have uploaded to Figshare - mostly presentations and datasets.
• Personal Github: my Github homepage, not so much on here, more on the group one above.
• Mathematical Matters of the Heart: my cardiac modelling research blog.
• Twitter: my personal twitter feed, mostly research/science-related tweets, but some other stuff too…
• Nottingham Maths Homepage: my official university homepage.

Research Networks

Some research networks that I have enjoyed being involved with:

• UK Mutli-scale Biology Network
• UK Quantitative Systems Pharmacology Network
• Models to Decisions: decision making under uncertainty

Plus an informal ‘Uncertainty in Cardiac Modelling’ series of meetings that I have been organising with Richard Clayton and Steve Niederer. We have a google group mailing list you can sign up for (just press apply to join on this page).

Scientific Societies

These societies organise good meetings and conferences:

• Society for Mathematical Biology
• Society for Industrial and Applied Mathematics and their uncertainty quantification activity group.
• Physiological Society
• Biophysical Society
• Cardiac Physiome Society - for mathematical modelling of cardiac systems.
• Safety Pharmacology Society
• Heart Rhythm Society
• European Society for Cardiology and their working group for cardiac electrophysiology
• British Pharmacological Society

Really useful software

• matplotlib: plotting from python with a matlab-style interface, but better!
• jekyll: this website is made with Jekyll which converts markdown to html nicely, and sticks a theme on it (in this case minima).

Other sites

• Journal Checker Tool to check compliance of journals with Plan S funder requirements.
• Sherpa/Romeo to check whether journals let you post preprints and things like that.
• overleaf: like Google Docs for latex documents, even acts as a Git repo for offline editing too.
• Stackoverflow and associated sites really helpful for tricky programming tasks, and even now some Scientific Computing questions.